PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025682.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 883aa    MW: 96854 Da    PI: 5.2283
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025682.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK23.31.2e-07588620127
      RWP-RK   1 aekeisledlskyFslpikdAAkeLg......v 27 
                 aek+isle+l++yFs+++k+AAk+Lg      v
  Do025682.1 588 AEKTISLEVLQQYFSGSLKNAAKSLGgplpipV 620
                 589**********************95555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542771.24E-20779874No hitNo description
Gene3DG3DSA:3.10.20.2401.1E-24789870No hitNo description
PROSITE profilePS5174520.317789871IPR000270PB1 domain
SMARTSM006661.4E-24789871IPR000270PB1 domain
PfamPF005645.1E-15789870IPR000270PB1 domain
CDDcd064073.20E-32790870No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDLDPPTSAS GDTCGVSSDA WPFDSLTTSL LFSSVSASPP LPPLPAYSSS WLTPPSPLWL  60
FEDRHLLPLD APQAPEAAVA AAVVEEVQRA RTGNSDTASK RVEQINHKWQ FHLSLDEDGT  120
DNSSLFKERL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY  180
RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSTEYPRLNH AISYNVHGTV  240
ALPVFDPSAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG  300
RQIALVEILE ILTVVCEEHK LPLAQTWFPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS  360
TSDVAFHVID AHMWGFRDAC VEHHLQKGQG VSGKAFITHK PCFSKDIRKF CKLKYPLVHY  420
ARMFGLAGCL AVCLQSSYTG HDDYILEFFL PPDCIDEDDQ NALLESIFTL MKQCLRSLKV  480
VGDRDSSGVS LQLSNMLKIE NEEFKTDVQF DNSDGSLNES PEGDTYGGAH KFDNGNMKVS  540
NMPEGHLLAD DYSQDNGASA GRPNGSGASD SSVLHKANKP PERRRGKAEK TISLEVLQQY  600
FSGSLKNAAK SLGGPLPIPV GPSSDSLNVE KVTQSKVAEP SNLAVDGDRD SSLQKSFEND  660
GHFGMLMAQQ GFIDNNNNDA QLEADKASHS RSSSGEGSIN SRTSEGSCQG SPANQTFVCK  720
PIASTFAEPQ LNPEEFHKEA FQEPQLPLSR MLIEDSGSSK DLKNLFTPAA DQPFLAPPSN  780
LVSMKHSGTV TIKASFKEDI VRFRFPCSGS VTVLKDEVAK RLRMDVGTFD IKYLDDDHEW  840
VKLACNADWE ECMEISRNSG SHVIRLLVSD ITAHLGSSCG SSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0853590.0BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967359.10.0PREDICTED: protein NLP3
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLK3XE990.0K3XE99_SETIT; Uncharacterized protein
STRINGSi000216m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47783660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein